AnnData
Skill Verifiziert AktivData structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
To provide a structured and documented interface for managing annotated data matrices commonly used in single-cell analysis workflows.
Funktionen
- Create, read, and write AnnData objects
- Support for .h5ad, .zarr, CSV, MTX, and other formats
- Data manipulation (subsetting, filtering, transformation)
- Handling of sparse matrices and backed mode for large datasets
- Integration with scverse ecosystem tools like Scanpy
Anwendungsfälle
- Working with single-cell RNA-seq data
- Integrating with the scverse ecosystem
- Managing large annotated data matrices
- Performing data preprocessing and manipulation for analysis
Nicht-Ziele
- Performing complex analysis workflows (use Scanpy, scvi-tools)
- Building probabilistic models (use scvi-tools)
- Performing population-scale queries (use cellxgene-census)
Installation
npx skills add K-Dense-AI/claude-scientific-skillsFührt das Vercel skills CLI (skills.sh) via npx aus — benötigt Node.js lokal und mindestens einen installierten skills-kompatiblen Agent (Claude Code, Cursor, Codex, …). Setzt voraus, dass das Repo dem agentskills.io-Format folgt.
Qualitätspunktzahl
VerifiziertVertrauenssignale
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