Instrument Data To Allotrope
技能 已验证 活跃Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting instrument files, standardizing lab data, preparing data for upload to LIMS/ELN systems, or generating parser code for production pipelines.
Standardize laboratory instrument data into compliant formats for LIMS systems, data lakes, or downstream analysis, improving data integrity and interoperability.
功能
- Convert instrument files to ASM JSON
- Generate flattened CSV output
- Export standalone Python parser code
- Support auto-detection of instrument types
- Handle PDF, CSV, Excel, and TXT input formats
使用场景
- Standardizing raw lab data for LIMS upload
- Preparing instrument output for data lakes or analysis pipelines
- Generating parser code for data engineers to integrate into production workflows
- Ensuring data compliance with the Allotrope Simple Model standard
非目标
- Replacing the instrument's native data export functionality
- Directly interfacing with LIMS systems (focus is on data format conversion)
- Performing complex scientific analysis on the data
- Handling proprietary data formats not parsable by allotropy or flexible CSV/Excel/TXT readers
Trust
- info:Issues AttentionThere are 29 open issues and 4 closed issues in the last 90 days, indicating active development but a slower closure rate for issues.
Execution
- info:Pinned dependenciesDependencies are listed, but specific version pinning is not explicitly shown in the README or scripts. Installation instructions use pip without lockfiles.
安装
请先添加 Marketplace
/plugin marketplace add anthropics/knowledge-work-plugins/plugin install bio-research@knowledge-work-plugins质量评分
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